Resources
algorithm for the analysis of biosynthetic gene
clusters, a focus on RiPPs
Analysis of secondary metabolite biosynthesis
gene clusters
2ndFind
Find Secondary Metabolite Biosynthetic Gene Cluster
finds regions of local similarity between sequences
tool for creating sequence similarity networks
fast and sensitive homology searches using
profile hidden Markov Models
functional analysis of proteins by classifying
them into families and predicting domains.
the collection of functional information on proteins,
with accurate, consistent and rich annotation.
journals of interest
Angewandte Chemie International Edition
Current Opinion in Chemical Biology
Journal of Biological Chemistry
offers information on the 3D forms of proteins
Leibniz Institute strain collection
tRNAscan-SE analysis of complete genomes
Compute various physical and chemical
parameters for a given protein sequence
Translation of a nucleotide (DNA/RNA)
sequence to a protein sequence.
calculate the theoretical masses of
peptides generated by the chemical or
enzymatic cleavage of proteins
Fragment Ion Calculator
MS/MS fragmentation calculator
work out the mass of amino acid sequence
optimize DNA sequence for recombinant protein expression
Journal of the American Chemical Society